Scaffold Ga0136623_10227993

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136623_10227993

Scaffold Ga0136623_10227993

Overview

Basic Information
Taxon OID	3300012045 Open in IMG/M
Scaffold ID	Ga0136623_10227993 Open in IMG/M
Source Dataset Name	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	796
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium PC51MH44	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location Name	Antarctica: Dry Valley
Coordinates	Lat. (^o)	-78.078	Long. (^o)	163.7214	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F072004	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136623_102279931	F072004	N/A	MANIHSAQLTFTHSLVTAAGYRLLPACYPAPTHSPLRNVPRGPLLQGGLTPCFAPTTSCASPKASYQLRFFARWSVLAAWTIRCWSVGPSRRYLTRTFSWMLGPLPRLSQWCIHPFLPTELRPSRNGYAVGSVAFTRTTTFVRTVISGLQSFLYVQASRFACHPGRSYRCLFRQGSCDFYFRAPCVSLPSRISDMLAVRIGQLTAGDLHPIRFATLSAASNR*

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