Scaffold Ga0153937_1022961

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153937_1022961

Scaffold Ga0153937_1022961

Overview

Basic Information
Taxon OID	3300012060 Open in IMG/M
Scaffold ID	Ga0153937_1022961 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from New York, USA - TSNY021 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1540
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: New York, Robert Murphy County Park
Coordinates	Lat. (^o)	40.8926	Long. (^o)	-72.8224	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013487	Metagenome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153937_10229611	F013487	N/A	MATYFVIGFDNKSAQKSKVRQVAKDVVKSEVYSQ
Ga0153937_10229613	F013487	N/A	MATYFVIGFDNKSAQKSKVRQAAKDVVKSEVYSQIYSP*

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