Scaffold Ga0153973_103507

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153973_103507

Scaffold Ga0153973_103507

Overview

Basic Information
Taxon OID	3300012064 Open in IMG/M
Scaffold ID	Ga0153973_103507 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA057 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3082
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Georgia, Yuchi Wildlife Management Area
Coordinates	Lat. (^o)	33.0838	Long. (^o)	-81.771	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022125	Metagenome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153973_1035073	F022125	AGGAG	LEVEESIWKKGVRKDTSMKDLGPCYRIKEGIYAKKGESILTIERGKRGSTDICGRPVEEGIYPTLQVTPDITSTLCGEKGWHMENGTRLSTHKPVNDKKWVPLTPHCRYIGWSRKEKGIYKVGFEIGIQ*

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