NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153965_1001874

Scaffold Ga0153965_1001874


Overview

Basic Information
Taxon OID3300012069 Open in IMG/M
Scaffold IDGa0153965_1001874 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5617
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Paynes
CoordinatesLat. (o)27.6228Long. (o)-81.8094Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071825Metagenome121Y
F104167Metagenome100Y
F104168Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0153965_100187410F104168GGAGMSEKNILSGDPKKAPADCQGHRSGERLIERPWLQLMCCALVSGREVGRIFRSKGSRQDRSPKESSEDSGVDKGRLGRDDVNLQTEKLHCNYSVLIVCAE*
Ga0153965_100187416F104167N/AVPSHHFTLTIFGNSEVFFVSFLLLYHCFVILIKYSRAQREKRLSPPIISPSVTLELKGYLSDLRISFVFAL*
Ga0153965_10018742F071825GGAVSWEEHKIYPELDLERRRRCNSGRLQRGQQAGKAWLGAHLDCITSIRFGIGGADKGATECRGSMGDQLTVFSRRAFVTVYKG*
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