NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153963_1003938

Scaffold Ga0153963_1003938


Overview

Basic Information
Taxon OID3300012070 Open in IMG/M
Scaffold IDGa0153963_1003938 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL047 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3053
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Withalacochee
CoordinatesLat. (o)28.5711Long. (o)-82.2848Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000383Metagenome1208Y
F035142Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0153963_10039381F035142N/AMVLQVAQGVGDGWGGVRREQHLSWSGMIRGPEFVSGEQPEGSCPLRNSRALAKRSNFAVRVTEVDSRRFLS*
Ga0153963_10039384F000383N/ALFLSYHTASFTSRRTSVHLHFSGLSIDLWVVVLEPGITEDHVLPSKVGDSEEHPFRVGFVMENHVYYFRDLTCLVGGAVHVVHWYGARDALGVNAFHSDEVSIYEVAHGSGVQKYLDGMHLTSVCGTDFYWEDDRCSVGVEGVDRELFG*
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