Basic Information | |
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Taxon OID | 3300012081 Open in IMG/M |
Scaffold ID | Ga0154003_1003217 Open in IMG/M |
Source Dataset Name | Attine ant fungus gardens microbial communities from Florida, USA - TSFL087 MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4796 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Florida, Lake Talquin State Forest | |||||||
Coordinates | Lat. (o) | 30.4401 | Long. (o) | -84.4954 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F035661 | Metagenome | 171 | Y |
F072496 | Metagenome | 121 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0154003_10032172 | F035661 | GGAG | MKILRRIRLYTGVCKIDDDLLERSRVARAGRSLIQFAIFVRAIEPVLALVAAVLLLTVPALAQTPGGNLFGGNDQQLGSGVREAIRWGRNLLFLLGVGGVGWGAANIMMEKSWGRQMLGGGVCMGIGGILSLVYSFSQGNAVNLDTDLGN* |
Ga0154003_10032173 | F072496 | GGAG | MRHRPIRPNIYLPVARFGVPISDWKFVFVATLIAYSTPFLLDLKLWGAPLELWTGLSAAALSIAFFNYARIGRRPFWLQHRLRAMFSSPIQRRALPIDSARRPGLRWII* |
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