NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136632_10017197

Scaffold Ga0136632_10017197


Overview

Basic Information
Taxon OID3300012093 Open in IMG/M
Scaffold IDGa0136632_10017197 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3165
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.1266Long. (o)163.9666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006320Metagenome / Metatranscriptome376Y
F050186Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0136632_100171972F006320AGGLSVYSIYKETHSSDGSATHERHYAGWAADRDDAILRANELYEGRDSTEAVLVIGHGPTEVEVVYRIDDEN*
Ga0136632_100171974F050186N/AMANLEEVAHQLLKALNEHQAHGREGATVEPGDQEAGGAGLRMGSPLYRAAIWWLLDVGALIPDEETNAQRRNTVGAQHRGFMFKITRHGLDMLRGT*

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