NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136632_10119537

Scaffold Ga0136632_10119537


Overview

Basic Information
Taxon OID3300012093 Open in IMG/M
Scaffold IDGa0136632_10119537 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1217
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.1266Long. (o)163.9666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018678Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0136632_101195371F018678N/ALLIKFYAGEVNPEDELLADFERNGLEAGRLKREGRLLMRPEEEPLGEERGDQLGRLVEEAGEGRAVWASFDWVRSVDPETALKQQDQLTELVYPRQLVVKTAALEDAIDRWPRSVLRRTQSTHPAIILASEDELSLSRATPMPAS*

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