NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137389_10002349

Scaffold Ga0137389_10002349


Overview

Basic Information
Taxon OID3300012096 Open in IMG/M
Scaffold IDGa0137389_10002349 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11489
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000195Metagenome / Metatranscriptome1659Y
F001794Metagenome / Metatranscriptome633Y

Sequences

Protein IDFamilyRBSSequence
Ga0137389_100023494F001794GGAGMKPVTFPCSGSAAEARARLEAAIDGRPWNTAGLDGWIRGERVVLYYRDTAKYRAIFRPTFVGRFRERDGKTALDGRFRMTLFARALLPIWLAPATVCLVVALVPTQLQPQSPAFRIALALLGGLLAVMAFGRFALEWWGRPGDVDAVSKAIRAAVQPH*
Ga0137389_100023499F000195AGGMDLTVTRAQYDAVRGARHLPDVLKKVLEGATLPKGGDRYVLHLTYEEATALNELCAWNVHTDAGGGVAPESKVFDDLVKTILTHPDY*
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