Basic Information | |
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Taxon OID | 3300012120 Open in IMG/M |
Scaffold ID | Ga0153998_1004713 Open in IMG/M |
Source Dataset Name | Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC082 MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3100 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina, Lumber River State Park | |||||||
Coordinates | Lat. (o) | 34.9171 | Long. (o) | -79.3534 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000591 | Metagenome | 1003 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153998_10047132 | F000591 | GGA | VKDVVELCASDMSQSSRVFTMELCCEFWYGDFGSGLPGIVFVAVFFPLNEVLESSLVPTTVEYFLYFSLRFSIDNYGQWVVLHRASCNWVVRGRSKLHYVEHWMKLLHLAWQS* |
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