NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153961_1001226

Scaffold Ga0153961_1001226


Overview

Basic Information
Taxon OID3300012139 Open in IMG/M
Scaffold IDGa0153961_1001226 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6390
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Withalacochee
CoordinatesLat. (o)28.571Long. (o)-82.2846Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038022Metagenome166Y
F053686Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0153961_10012261F053686GAGGVVKGKEELSDIKGENTRVALSEPASPDKMSEVYSRICCGSLLDIPELMRVKEAIG*
Ga0153961_10012264F038022AGGLEKSKAYQQKISTKGKSPLSYAQIASNVTNAFKIKKAFLVLPNKKVLEMHKVAFGQPANRARKVQFTTKGPSRKQAIILVPNNLVESIMGNASTHIFQINALLKNVKSSMRSKFICPCSGGIAIVINNVPNPSDLFIIEKYFKSVEDINGNDIPSPRLPQSKSYLKIMGLSYLRADSNKITSENVTDFMKYIDLFENVSLATKPYIIKALPKSDMAIIWFDI*
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