NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153958_1001538

Scaffold Ga0153958_1001538


Overview

Basic Information
Taxon OID3300012141 Open in IMG/M
Scaffold IDGa0153958_1001538 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL042 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6464
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Wekiwa Springs
CoordinatesLat. (o)28.709Long. (o)-81.4873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003619Metagenome476Y
F022328Metagenome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0153958_10015381F003619GGAGMEIWLNEVCDNIPYSFWSQDAAVAQTTFYGIAGLKSLANHQLRSYHTHKVWCGGADEGLIECGKVHEWFTDYSISELVTVCKGGHLRDTMRGGSRLNLPSF*
Ga0153958_10015387F022328GGAGMEDGCLEGFWELQDGTVCGGVVDDWGQNGAELCEEVEY*

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