Scaffold Ga0153996_1003712

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153996_1003712

Scaffold Ga0153996_1003712

Overview

Basic Information
Taxon OID	3300012144 Open in IMG/M
Scaffold ID	Ga0153996_1003712 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC080 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5193
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Psathyrellaceae → Coprinopsis → Coprinopsis cinerea	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: North Carolina, Lumber River State Park
Coordinates	Lat. (^o)	34.917	Long. (^o)	-79.3533	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016096	Metagenome	249	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153996_10037122	F016096	GAG	MDVRQLTAEQREELIEDLLALKDVVLTEESCPSEEEEDFA*

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