Scaffold Ga0137352

Basic Information
Taxon OID	3300012164 Open in IMG/M
Scaffold ID	Ga0137352_1000002 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT730_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012164 Open in IMG/M

Scaffold ID

Ga0137352_1000002 Open in IMG/M

Source Dataset Name

Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT730_2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	85617
Total Scaffold Genes	152 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	117 (76.97%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

85617

Total Scaffold Genes

152 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

117 (76.97%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9229	Long. (^o)	-106.9517	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9229

Long. (^o)

-106.9517

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034408	Metagenome / Metatranscriptome	175	Y
F056282	Metagenome	137	Y
F061612	Metagenome / Metatranscriptome	131	Y
F074512	Metagenome	119	Y
F091541	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137352_100000253	F056282	AGAAG	MIIDKPIAGVKTDTRTHPPGKKGAHLSLREVADRAWVGRKSPRVRAWATQALAAAGVSTGGRRQKGQAILDAFRNKVPYIPDPVMGEFMATPEQTLCLDEGGLCIIGGDCDDAAITLSAAMMSIGIPAMIVGSSHKPPIDVPTHVYMAFQDDLGDWVKMDGTTKLPAGRVAPHSREWWVEPGETAKAAGEGDFVGMSGVDDSGTTDGALAGPLSPVELLYPFVR*
Ga0137352_100000256	F091541	AGGAG	MRQQTGLSIIGRRTHKYGDAQEKVRRIPFGYSKEPGTLGAPADMAQKCIRCSFGNIPVIEEVVWTIPLPLTPDEALATLGDTVNLLSGSSSVPGVASIDSTFLINGILQTDILAQGVGVHVFCEPMSFSTIGNAFEAPSTTQEPPPSPDVFTTNDVFNGALGPEFAGAEPTQTAPVPAVFEFGAPVWRAGWNFINAYQFQWKTSQRELVLNELAADVSYFGSFADAEAAGTSEIPIIEFVAQVNATYRSKGGASIFLPVSFRRVGSVNATSATANAGIFHPTRDFDLAPVTWGGLRWQGYGCRGQMYRPVESPCFLERGIPIGMLFVVQDAVHQALMLESVTINNGALGSNVEPDENLSCFTNVGAGAATGTPTAAPITAGSGNNVMLEQTLDATPVLVQQQVNVCRQTFKGGILKLAIKIKGWEMPGGWKSWCSTNMPSVVATTSAG*
Ga0137352_100000257	F034408	AGGAG	MQPKDQNIKNLALYAPRVAFAMIAGVPRVPFINDIPIQFSSSTVNAPPVVQSFLNNVTQDTIIERVAFNLFQQNSFPGSPFQSLYFNQLKQSGQTGVGVQMAVYGGPKYNVNDTFTDLGNLVDVFAMTWPEGWPLYKQSNIKVSAILLQTPVSVPFNVTLTFLGWQFLDKAIDDMSDKEARDRLRKLGIETPDLETLLK*
Ga0137352_100000265	F061612	AGGAGG	MPKVVHQETMCCGHKKCPTVTVFEDGSMEITDNDAEKGSVGTIKLASEQVARLTELAKNAK*
Ga0137352_100000267	F074512	GGA	MVLFVLLSALIGTTLIVVRSALFRPIRKLWPALLSCSRCTGFWVGVAAGASGLVETGHGRPIDAYIVGAATSFLALLADAVFIQLLGPPEESH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137352_1000002

Overview

Ecosystem & Geography

Associated Families

Sequences