NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137327_1035886

Scaffold Ga0137327_1035886


Overview

Basic Information
Taxon OID3300012173 Open in IMG/M
Scaffold IDGa0137327_1035886 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1067
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8895Long. (o)-106.9084Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013066Metagenome274Y
F027435Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0137327_10358861F013066N/AMLLERGFNKIFDFVEDSKPHGRPDRVTVARRSFVARNPELIKRYWKASIRGYHFIRIAPENYPFLRFVEAKLRLTNPDESERMRDLWSMELMEGAFFPMDGQLSVEGVWRILEEHQDAGVLAKSISRADVDTMIQQELVREAWAEISQTDEIKRNLERLQPVIERHGY*
Ga0137327_10358862F027435GGAGMKLRVGNGCWHAGHVQVAAYCREAGLFTQEGIDVEVVTAKIYAKGMESSRPDGERYDEVGTVLRDMIAFNIDIIPDVHVRTPFAERALGNDELRIIGGWRNWFPASLVTAPGVKSIKELKGKRIGDWYRGGI
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