NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153922_1014626

Scaffold Ga0153922_1014626


Overview

Basic Information
Taxon OID3300012181 Open in IMG/M
Scaffold IDGa0153922_1014626 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1825
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: New Jersey, Brendon T. Byrne State Forest
CoordinatesLat. (o)39.9181Long. (o)-74.5218Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005215Metagenome / Metatranscriptome408Y
F039849Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0153922_10146261F005215N/ASKSDITETTKVVAHIPLPGSAVRQIFFQEENGRRYLYLQQNVHFTVVDVTDPEKPQIVDRVASGGKLEEVGSGLAIAVQSDKSGEGTVPTQTVRLMDMTDPKNPHTVKTFTGVTSIYSEDGRHLIYLTNGEGLSIVKHTVRRRLPLCTSESEENSVVQCR*
Ga0153922_10146262F039849GGAGMSNGTTYTRFTLTGKFLKRPAGDVSNPPSLAVDCGRGRGSEGRLIDGNLLVGVPLKIHYVEPTEIHGTSYYPKVFVQVRVDDAKSEKRSWVPGKDKTSAVFSKHSLQKILRAHTVEITTEDENGSEVAMQFDVPDSKAVEQACNVDTKK*
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