NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136619_10097908

Scaffold Ga0136619_10097908


Overview

Basic Information
Taxon OID3300012185 Open in IMG/M
Scaffold IDGa0136619_10097908 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ353 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1125
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0624Long. (o)163.8323Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006538Metagenome370Y
F091338Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0136619_100979081F006538GGAGGMACEMCGGGDAWIKTCLSPGGTRLTVCDLCWAEHRDDLIIVPGDHVVTARCDSCGIYGNPREFSGLRLGGRKGAYSGICAACARSKVREEEAS
Ga0136619_100979083F091338GGCGGMSEHRPEVHHVAPRCLLTLYERANGLPDGASLDGEGIQAWLEWEMEAMRWRVPVEISRSELERLIEASEEVLEREKHRLLHERNWKRWGARGGRETFRRYGADWFSLLALKRWRRITAEDLDAARVLR*
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Institute for Fundamental Biomedical Research
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