NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137388_10212639

Scaffold Ga0137388_10212639


Overview

Basic Information
Taxon OID3300012189 Open in IMG/M
Scaffold IDGa0137388_10212639 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1747
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004984Metagenome / Metatranscriptome416Y
F056730Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0137388_102126391F056730AGGAGMEKYVEQYQAWGGGLTLPIWPDVQGWQEGNFSITEVPGTPVPSWFQKILHSKKNLADIEK
Ga0137388_102126393F004984GAGMMSPTAEQIHYSTETFNECSRLVHSGRVQAGIQYLMHRWRAIPEALQTRFLHAEFLTLPADTQAGINDILLVRSREAGITERTAALRHQMRQDRAQTARLDATEAGINAAYRKRWHRLCGMAALCALAALLLSVYNAL*

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