NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137364_10001485

Scaffold Ga0137364_10001485


Overview

Basic Information
Taxon OID3300012198 Open in IMG/M
Scaffold IDGa0137364_10001485 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11047
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001384Metagenome / Metatranscriptome709Y

Sequences

Protein IDFamilyRBSSequence
Ga0137364_100014859F001384AGGAGGMADIRGVGKKITYSEDNPVTASLEEFRKQRDAVKREPKDDAERERLARWLGHRGRDELESTVGSACYACSHFEMDSEWRYFLADHIGTEAGHGWGYIRQANAIDSRRDHARPDPDFERQYGLLPRVEHHQLMQRDFLSYIFSGNLWPYGHCTAVTIQSIQITTPKVLDFEERVVHAEERSHHDAILQKIHDHVWALIQEYGEGPIRRKIAEIDAKALNSRPRTIFDPPRREFLRKYFNVPLENVRKFPEWREYLYLNVLGFPPEPVYIENWPAEIPQPKAGL*
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