NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137363_10000249

Scaffold Ga0137363_10000249


Overview

Basic Information
Taxon OID3300012202 Open in IMG/M
Scaffold IDGa0137363_10000249 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29906
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011617Metagenome / Metatranscriptome289Y
F050292Metagenome / Metatranscriptome145Y
F068014Metagenome / Metatranscriptome125Y
F104745Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0137363_100002491F011617N/AALALPLENAEPASPSPQPKFLYGGRDDYRWQLGLGFTWLRFQSSVFNASAVGINTSLVYFTSDWLGIEGNFTAAFAPTLFGNEHVKIATYGAGPKIAWRQKQWEPWLHGIFGGAHEQPQITGQSRNSYAIKAGGGADYRWNPRISFRFEADYVRTGFFSQSQNDIQLAGGLVLHF*
Ga0137363_1000024915F068014GGAGMLNTGLLLASDLLKAQLPENIQAAVHRDTRAARLAPQISKWLPAAGHSPPGLFERAAFRLRMRGSLLSAPSYLLRLSFSPTEEDWMVGAGAEVHGRGFLDAVRRPFRLARKYGRRGKS*
Ga0137363_1000024917F104745GGAGMKRASKVRVKKPYHAPKLIVYGDLTQLTMTMGTTGQTDNPGKMART*
Ga0137363_100002495F050292AGGAGGMHFRVKVWVLMLALAALFGSAGAPAGAQDKQHVVSLSDLNKDAARPAQTRQSNEEAVRTLLSSDQAQKAMKSANLDYQKVDKAVSQLNDEDLARLAQRSRQAQSDFAAGRISDRDMLWIILIALAIVVLAIALR*
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