Basic Information | |
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Taxon OID | 3300012202 Open in IMG/M |
Scaffold ID | Ga0137363_10001563 Open in IMG/M |
Source Dataset Name | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13267 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (68.42%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026134 | Metagenome / Metatranscriptome | 199 | Y |
F035093 | Metagenome | 173 | Y |
F056116 | Metagenome / Metatranscriptome | 138 | Y |
F099684 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0137363_1000156311 | F035093 | N/A | MLLGMLMGSQAAAGQIPAPRIVLAQKPGTQVIRVFRAESAPWSASSFLLSSDRENSLAHSILRIPGPYERDHELERLSPIRKDQTLIFTQLSLPLVQLWNGKLQLDAFQSTLRIQNGQVGALSYGAMPDFRLPQQNFPGGSRSVHLSGLSLNFHFGRDERTRRPTLAWRCVPRFVAVLLN |
Ga0137363_1000156315 | F026134 | GAGG | MDESEFRSLAKWQISVPPRCSENRIQYLLKTEEQILQSISARAPISKILNDICNALDCEIGNMVSLISVPDDNAISGAEVLHSAVLFGLYRFFAVVIVAENNGEELGSLEMYSCVSRNPSPREFQLIERAVCLAAIAIKRYRETGDGGNCRIHGIRSARGYVPETPTSMN* |
Ga0137363_1000156318 | F099684 | AGGA | MALSIFLSKKGIEEHVRVGASKILINPTFYKERMKEAKKIVAQLKRPN* |
Ga0137363_1000156319 | F056116 | N/A | LTVEVVMKKYLLAATCLTLVAGVVYAKKLNNEQKRLEECGVVMQEVLNV |
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