NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137399_10066412

Scaffold Ga0137399_10066412


Overview

Basic Information
Taxon OID3300012203 Open in IMG/M
Scaffold IDGa0137399_10066412 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2689
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022177Metagenome / Metatranscriptome215Y
F029395Metagenome188Y
F049864Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0137399_100664122F049864GGAGMAKFILSVGDGTFEILESEAKRRDVTVQQLLRAVIVPEWLRENLEVNSSLMAPRANPPSMQTREIAPHLMRESIYPGQRDHLLQTPVNRLRP*
Ga0137399_100664123F022177GGCGGMSDTRDRIQENYRWTAYMKLKGQTWARREDEILEEFDGFVQSLRGLGVDYNIIVMVEGGVPRQIRPEYTPRDSEAKIAREGPGA*
Ga0137399_100664124F029395N/AMDAMLSSNEKREGPPFSEVREPEAGDRLKGLLVDLIDSSKALDVRVWLDGVYTDIADEQVRGDWMNDRDVYFKVEGRVDKRNGS*
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