NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137380_10133409

Scaffold Ga0137380_10133409


Overview

Basic Information
Taxon OID3300012206 Open in IMG/M
Scaffold IDGa0137380_10133409 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2267
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023674Metagenome / Metatranscriptome209N
F079246Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0137380_101334092F079246N/AMLRPKSTISAVMRKIILVLAFLCLMIAAIVGLVGTYQVDVLRIDLANANAARDAAEHRRVTQETELKTRETAVAGAEAKIAEAENKATKAQTDLLKLQN*
Ga0137380_101334093F023674AGGLGKKILNIMATMSISSNPGQDVTVTLALPATNPEAGPVSCSFTFQTTKGLLGPSSNPTDQSGFANSTQDLFAVTVEPATKAAFVHFFLTSAKGNVVFANDVNARVAKLLSPPWKDDAKGFLRVETIQGRKVKLSTTDFAHAPFQTHTFWVTVGATGKVTLAP*
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