NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137378_10022366

Scaffold Ga0137378_10022366


Overview

Basic Information
Taxon OID3300012210 Open in IMG/M
Scaffold IDGa0137378_10022366 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5554
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053187Metagenome / Metatranscriptome141N
F097027Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0137378_100223661F053187N/AGATTVTRTIGTAADAKTTNYAFSDLINLRGQVERQRGRPDTFVTVPESPAVSTGVEIGWYPLIQSNITSVQFTAALADYLRTGSIAELFGLRLFVDKVYDLGAANYGSNANDVIGSVLVSNEAVGWAQAEDIVSEVQRWALQVGFRIVTHSIGKTANILPAFIGNIKHA*
Ga0137378_100223665F097027N/AVPNTAQLNDLITRASSYVDQVSSHTWKSQTVTEYYDALGSGPRAGTIILRNRPLLGVVEAAWWYGGIQAWMPGLQGYSEETVSVQQGPSTILDNFQKTVPSDNLQQPQSYLVYYPEGKIVWNTMRLNSRLRYRVIYTYGYTVPPDFIRDLTSVIVAIDLLTFWGSQLGIAEDISLMKKRLEEKKFRLEARASQRPAAAVG*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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