Scaffold Ga0150985_107434637

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0150985_107434637

Scaffold Ga0150985_107434637

Overview

Basic Information
Taxon OID	3300012212 Open in IMG/M
Scaffold ID	Ga0150985_107434637 Open in IMG/M
Source Dataset Name	Combined assembly of Hopland grassland soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1051
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location
Location Name	Hopland, California, USA
Coordinates	Lat. (^o)	38.972988	Long. (^o)	-123.116539	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000818	Metagenome / Metatranscriptome	878	Y
F004649	Metagenome / Metatranscriptome	429	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0150985_1074346372	F004649	AGGAGG	MEPRKEEKPNRFQIEQLEERIAPSNANFPPGQFPSGNPAHAPGKSNPNEVPATNPSND*
Ga0150985_1074346373	F000818	GGAGG	MHYEGGFTMESSKDLKNRFRIEQLEERIAPTIVAVNGGGNTPNGEANGVPRENPAGYAPPGQNK*

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