NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0137435_1000066

Scaffold Ga0137435_1000066


Overview

Basic Information
Taxon OID3300012232 Open in IMG/M
Scaffold IDGa0137435_1000066 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44063
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (85.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9779Long. (o)-107.0031Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054114Metagenome140Y
F094595Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0137435_100006614F094595GAGGMATSPASRIGSAVKKAVANRASQKRTFHFFVRVTDEQGNVIPGAKLQVDRIMSDARKVVEFLDTPEYANSGLTRIKHEVVANRRGGEDDGATSVG*
Ga0137435_100006633F054114GAGMQALSMDQKQKAVPAYTVEPMKRKTVVNRTVKDEIGFRVVPTEVEVDGYIVRTLRGDSVFVTHEDLVRMKLDKNLVPLFMEGGDDTPVGVQPTNAALDKRQKQALDAMTRLIESDPNIIDKLLGSVDLTDKQED*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.