Scaffold Ga0137435_1012422

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137435_1012422

Scaffold Ga0137435_1012422

Overview

Basic Information
Taxon OID	3300012232 Open in IMG/M
Scaffold ID	Ga0137435_1012422 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2400
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9779	Long. (^o)	-107.0031	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081905	Metagenome	114	Y
F094821	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137435_10124224	F094821	GGCGG	VFDSLTVTGLAGAVMYVSREAVVIKSWRIMRVKADGGHWMLSAKIDRVVSAFYARQAPLLFTAPRKGGFWLWPVDAIEIGETSLRAELGPPER*
Ga0137435_10124225	F081905	AGGAG	MAIISGRNGSVMWDPAGTLAVEVLSLNAWVADFKTEFEDVSCFGDANRVYLPGLKDAGGTLGGFFNSAELALFEAAEQDTPGLLKLIPSTTEPTFFWTGPAYLDASIDASLSAPKVSGTWKAAGPFLLDGGVLGADAQAARERRLAGRTPKRK*

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