NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126329_10119419

Scaffold Ga0126329_10119419


Overview

Basic Information
Taxon OID3300012273 Open in IMG/M
Scaffold IDGa0126329_10119419 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-85 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1400
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameHawaii, USA
CoordinatesLat. (o)21.3935Long. (o)-157.7156Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025894Metagenome199Y
F032113Metagenome180Y
F089651Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0126329_101194192F032113N/AVWRTAVQKFSSGGSGFDPSFSKTEKVRVVGVDQIRQCSRMKRLENGADVDSAQSEVSWARIQFNVTRKNEKGEEKRTTETECALASKEQKDCRLGTNAVGVLSASGEVQGRMDLARR*
Ga0126329_101194193F025894GAGVTEDDSNDEKSETEVGSCVKGSRMRKAVPPPEDEILLELLRGVLISE*
Ga0126329_101194194F089651N/AHREVDMLTKIERREERQKLRGESVCRIIEMNVKVTGDDKFKGEKRTEVIEENREWSEISGRRWRMIDIED*
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