Basic Information | |
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Taxon OID | 3300012285 Open in IMG/M |
Scaffold ID | Ga0137370_10239269 Open in IMG/M |
Source Dataset Name | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1073 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 39.5673 | Long. (o) | -123.4758 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001645 | Metagenome / Metatranscriptome | 658 | Y |
F038354 | Metagenome / Metatranscriptome | 166 | Y |
F073296 | Metagenome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0137370_102392691 | F038354 | N/A | MPQEAATTGERGDCDETFSAPATVITAKVSMQVPVIPEPFASADEAAQFLCVKRRYLLELARRGIAGAYALGAGGKRKIWVFRLSELAASVVRNETS |
Ga0137370_102392692 | F001645 | AGGAG | LALLNSPSKQPKTTTIQVRLEEEVRYNLDRYAEFIDANASYVVSEALKLLFRKDAEFKRWLGQDTNNHNHEQSQNEGTTKTA* |
Ga0137370_102392693 | F073296 | N/A | MMVFMENTIVLTDAERMELNQRAASRSGRADDARRARLMLLLEAD |
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