Scaffold Ga0157141

Basic Information
Taxon OID	3300012346 Open in IMG/M
Scaffold ID	Ga0157141_1000158 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Emily Creek, Ontario, Canada - S29
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012346 Open in IMG/M

Scaffold ID

Ga0157141_1000158 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Emily Creek, Ontario, Canada - S29

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29493
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (16.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

29493

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (16.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Kawartha Lake, Ontario
Coordinates	Lat. (^o)	44.46181	Long. (^o)	-78.6228	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Kawartha Lake, Ontario

Coordinates

Lat. (^o)

44.46181

Long. (^o)

-78.6228

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002018	Metagenome / Metatranscriptome	603	Y
F011920	Metagenome	285	Y
F029371	Metagenome / Metatranscriptome	188	Y
F030019	Metagenome	186	Y
F054038	Metagenome / Metatranscriptome	140	Y
F064513	Metagenome	128	Y
F088546	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157141_100015812	F030019	N/A	MIVTEIKDFEVYRPSDMNLVYLHVTLHDEGDTNTNGEILAEYEIEIYDAYANYKITKKDYNETLTIKQTKDCDDYLTTLYEANYFEDAYIQEYNETDDEELSWFI*
Ga0157141_100015817	F064513	GAG	MWEKVLVQKDTIVRYKRSFVPKTRFQTRIEYKLKRDTLKMIQKVEVVKWKTEKHKNVKPNILLLVLGFAVGIFTNYLLRHYKTPL*
Ga0157141_100015828	F054038	AGG	MAYKNDGTFNVLYKTRNKIAKTLRRIIAEENLIDTEALYDSIRINAKIPALGELEIQILAMYYFGFLNNGTRNMLPFDLCAKLTARLNAEGTTAEIYQQYTEWMAKRYPILQVARILGEKKSIVYTFEPIGGSFSDPLEFTGF*
Ga0157141_100015832	F002018	AGG	MTSYQALINEITTFYDNHIQVKKVGSDFKEQMFNFATKDEKYPIVYIVPVTALATENTNDFVLEIYCFDIIQKDRANINVILSDCQQILYDLYTYFINSTNYAFDLVDTPSFEPLNNDLLDYAAGWVMTATYAVNNWTDCAVPLKQEPN*
Ga0157141_100015840	F088546	N/A	MKIKDEYKGKTILIYDSILGQRKIEVDKIDPRRFTYYVSMGLGYLFEKPTIAYTGIDHETAQSDAVEEPKAVEPTETRKKPATKTRKRKTNVTTN*
Ga0157141_10001585	F029371	N/A	MTKETKLVALTAFLPVLADFIEDLNDQYVFKQTLKRKANILAEEIQRVDRDVLRIDNETAANIFNQQIELQIAFRQWINESIKF*
Ga0157141_10001587	F011920	N/A	MELDLKILWAKNTLWVVRERIKNVRLKLEKDKPDAKDYINGGKDSEEQLLKTELVIIEMQNEIVSLNRELNQLARRNAQLRVAYDELKNELKFKNIEL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157141_1000158

Overview

Ecosystem & Geography

Associated Families

Sequences