NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157141_1000923

Scaffold Ga0157141_1000923


Overview

Basic Information
Taxon OID3300012346 Open in IMG/M
Scaffold IDGa0157141_1000923 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Emily Creek, Ontario, Canada - S29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7393
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKawartha Lake, Ontario
CoordinatesLat. (o)44.46181Long. (o)-78.6228Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010245Metagenome / Metatranscriptome306Y
F068748Metagenome / Metatranscriptome124Y
F085611Metagenome / Metatranscriptome111Y
F093757Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0157141_100092310F068748GGAGGMITPDLLKTLTTFSAPALTRAAKDGGYKGPAFSSCRFLGITNGGQFCYMGVYLCEGGTDSTKVFLTHTGSRVIADVQLTDW*
Ga0157141_100092318F093757GGAMKTNREKNTEHDRKEILRVRPKQAGKYDFAPLEAVVRQWVTEAK*
Ga0157141_10009232F010245N/AMTKRTARKDSNYIIYAATHNGQSYIGLTRKGTVSVKKAVLERWRKHISRAKHEDRDWEIYRYIKAGNWTDWEHEVICVIRGRAEAYAYERAIVKEIQPELNDQYL*
Ga0157141_100092321F085611N/AMNWELYEVWSIDEDGFEELIDTTKSLKEAREIAEANLTEYFHECVIYQEDANGELIEIERCK*
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