NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157142_1000001

Scaffold Ga0157142_1000001


Overview

Basic Information
Taxon OID3300012347 Open in IMG/M
Scaffold IDGa0157142_1000001 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Fish Creek, Ontario, Canada - S48
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)288673
Total Scaffold Genes426 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)107 (25.12%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameGranton, Ontario
CoordinatesLat. (o)43.2206Long. (o)-81.2368Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005879Metagenome / Metatranscriptome387Y
F023608Metagenome / Metatranscriptome209Y
F024315Metagenome206Y
F041197Metagenome160Y
F082698Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0157142_1000001106F024315N/AMNYSELSKMSVEELRDINQMVVALIKSKRNMESLQNKIGLRVGMLVKVNHPKLQGRELEVTKINRTKANLRVVGGFASYNVPVSLIQY*
Ga0157142_100000118F041197N/AMSITFGGEHLTIKGSTKATIKRSIEIVGTNSVLPIEIIGDFKDIPPHLHQMYIESMIASYGSVDVYDNTEPEPKTIEEQKSEWRWNRIVDIIGKAIR*
Ga0157142_1000001262F005879N/AMSTFDGKIFWREDFDGESAQGGIFTRSVDLKKFMELVEANENQNGGEVIGLRFDENNLELIVKR*
Ga0157142_1000001355F023608GGAMTNLTEEIGRICNLLEDAYEEQNWQIVKKMIEALDKIYNDLDRADNGFIDYED*
Ga0157142_1000001401F082698N/AMSNNKMIELMTMIGETTSENFSPTLRAKLVKVNEKTGVCTMEVVESPYTSMKTMGSLNEDRIGEKYKAPVYRIWNAFFY*
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