Basic Information | |
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Taxon OID | 3300012347 Open in IMG/M |
Scaffold ID | Ga0157142_1000039 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Fish Creek, Ontario, Canada - S48 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 72100 |
Total Scaffold Genes | 96 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 74 (77.08%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Granton, Ontario | |||||||
Coordinates | Lat. (o) | 43.2206 | Long. (o) | -81.2368 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F034151 | Metagenome / Metatranscriptome | 175 | Y |
F044442 | Metagenome / Metatranscriptome | 154 | Y |
F053790 | Metagenome / Metatranscriptome | 140 | Y |
F078236 | Metagenome / Metatranscriptome | 116 | Y |
F085212 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157142_100003911 | F078236 | GGAG | MSLKHIIKHTETEIVFKCYITSTGGGNVDLSLENDMTKSTQVYVAPTSVPVETDGHFAEYTGSRVYITGLWWGTKSGKQLDITRILDTTPDPDTVHGHYYLNGSGAYEWNTAGFSDRTYANKDIRLTFDGEGHCIVRLRKEGWNPKVETAQFSIYDNTDAVGS* |
Ga0157142_100003932 | F085212 | N/A | MRVFQETTKDWAVDCPNHIYYLTDDKSKMVAFYNVNTGKTTKFKKPIGFDTRRRTFKELKRK* |
Ga0157142_100003936 | F034151 | N/A | MNKARLTPNLLSFVTVRRGEWILKVSVFKNKQIMVIAMNCFDVENLMIRYFFSQHHAADFIEKLIEE* |
Ga0157142_100003945 | F053790 | AGGA | MSERIYVCVVCGHQLSEADWLSLPDTVNCPECGVSKDDYVLME* |
Ga0157142_100003953 | F044442 | AGGA | MLKFAALSLSQKRFVVAVLEAQPQYKKNPQITLKECASIYYEMRDQRTGAKGEKIGYPNWLFAKNKVERGVYQLPVPTAEELSAFAKEIAVKNATPVAKAKAKVAKLAKAKVVKVKAPAKKVAEAKETEMEISRLQRVIDESDSFDDDTEDFNAILRENGIEV* |
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