NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157142_1000039

Scaffold Ga0157142_1000039


Overview

Basic Information
Taxon OID3300012347 Open in IMG/M
Scaffold IDGa0157142_1000039 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Fish Creek, Ontario, Canada - S48
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72100
Total Scaffold Genes96 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (77.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameGranton, Ontario
CoordinatesLat. (o)43.2206Long. (o)-81.2368Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034151Metagenome / Metatranscriptome175Y
F044442Metagenome / Metatranscriptome154Y
F053790Metagenome / Metatranscriptome140Y
F078236Metagenome / Metatranscriptome116Y
F085212Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0157142_100003911F078236GGAGMSLKHIIKHTETEIVFKCYITSTGGGNVDLSLENDMTKSTQVYVAPTSVPVETDGHFAEYTGSRVYITGLWWGTKSGKQLDITRILDTTPDPDTVHGHYYLNGSGAYEWNTAGFSDRTYANKDIRLTFDGEGHCIVRLRKEGWNPKVETAQFSIYDNTDAVGS*
Ga0157142_100003932F085212N/AMRVFQETTKDWAVDCPNHIYYLTDDKSKMVAFYNVNTGKTTKFKKPIGFDTRRRTFKELKRK*
Ga0157142_100003936F034151N/AMNKARLTPNLLSFVTVRRGEWILKVSVFKNKQIMVIAMNCFDVENLMIRYFFSQHHAADFIEKLIEE*
Ga0157142_100003945F053790AGGAMSERIYVCVVCGHQLSEADWLSLPDTVNCPECGVSKDDYVLME*
Ga0157142_100003953F044442AGGAMLKFAALSLSQKRFVVAVLEAQPQYKKNPQITLKECASIYYEMRDQRTGAKGEKIGYPNWLFAKNKVERGVYQLPVPTAEELSAFAKEIAVKNATPVAKAKAKVAKLAKAKVVKVKAPAKKVAEAKETEMEISRLQRVIDESDSFDDDTEDFNAILRENGIEV*
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