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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012347 Open in IMG/M |
| Scaffold ID | Ga0157142_1000176 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Fish Creek, Ontario, Canada - S48 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28512 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (75.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Granton, Ontario | |||||||
| Coordinates | Lat. (o) | 43.2206 | Long. (o) | -81.2368 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012328 | Metagenome / Metatranscriptome | 281 | Y |
| F015856 | Metagenome / Metatranscriptome | 251 | Y |
| F026827 | Metagenome / Metatranscriptome | 196 | Y |
| F030356 | Metagenome | 185 | Y |
| F066604 | Metagenome / Metatranscriptome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157142_100017611 | F066604 | AGGA | MEKKPTEKKKVTSKQVNTPGGGRGGARANSGRPKGSTEQVTIDGLLLALKDKSGGKPYEALLVEDFMGARARGDSQLTVKYHNLILNKVMNSLAKIEVTDSADAVEMKQQAFAEALAKMTGLKKD* |
| Ga0157142_100017614 | F026827 | AGGA | MSNPQSKPINQKRGPTTGNGGTGSKRQDFMAEKSKSSSEKAQLANMVTSALEMRGRGQFGGRTNPALEGLHSNTGPKRNPTASKK* |
| Ga0157142_100017615 | F012328 | N/A | MKKKTTKPTTENIWDAPAEDVLDSVTETFTEKVQEVIEQTKPKQPKSLNAIQFDLEGLMTDFPTAKELERFVFDETGIVLNLKGRANKLKYQVAMDVLNGEQVDSVFLGDNNPYIDKTEMVPVEELKAKPARDKTLPARSHMQNSFYCPMIPHPDDTMRAMDKKVHMVFRKYDNGMISYEIQGPLEQIPHGEKINKYGKVVPEIIKWVDPRTGEQVVMREDGTLTQQGKRLRALMQTKKVNKTNQWDVWIDREFLSVDNSVLNNVWDLGK* |
| Ga0157142_100017620 | F030356 | AGGA | MLDIKNIPVDDINQNRKINERFVRMKNLMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVIAKGLMPNGEINFEFVADGEDDEYAARQATDMVSKVVNQMNDPHFILERWIMDSAMHKNGMMMIKPVREKVTRYVETEGTLEQLKAFEAQAAEGGLTALRQSRRRVKVELEKVWKEMQGATKEFNQGLAQEMVGGFVDQLGTTNPDDMDGLMESNTDGLQTTQVDGEQQLLKDSIGRNSIYSAKYKLTGYGINIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEAMDLYPDINLEEFRMHAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSASSADPDSKQVSVVTVWNKYDIDGDGELELVELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYNTSAARAEIQLGLLTATPRLGVKPDRLDFEMLQDGEAAIFILDSKFDPSKDVYQVPPPSGNLQFLEVAMNRIQQDTMAMVGMTTPQDVFNPEVMAEGNSGVKLQLALSPNQIIQDNTVRNAAEGLREALWLVWRTLIQYGDDYGVKKLAQSVHPDKKPEFLDFLAWDDMNFCDRKQVHLELALGMNSEENALGRLQIIQKCQSDLYTATQSMVTSGTLTPEIYKKIKKPFADTLYVLGVKDCDSYLPSDEEVMAMIKQANESMKNKEPSPIEKKDLSQAMLNQVKANQINMEVAGQDAETQLDYMALAQGDPKVYS* |
| Ga0157142_100017621 | F015856 | AGG | MINENSIEFYNNRLTVDYTNLSKLSPQQKDRIRQYGSQAEQLLKNKDLAMFIHHFKFELADNLSGIRGFTADDNQQRVAVSHELGAIDSFVNSLKRAVYLKNKLGNTDIDAQV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |