NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157142_1000253

Scaffold Ga0157142_1000253


Overview

Basic Information
Taxon OID3300012347 Open in IMG/M
Scaffold IDGa0157142_1000253 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Fish Creek, Ontario, Canada - S48
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21230
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (68.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameGranton, Ontario
CoordinatesLat. (o)43.2206Long. (o)-81.2368Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001957Metagenome / Metatranscriptome611Y
F003268Metagenome / Metatranscriptome496Y
F026214Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0157142_100025315F003268AGCAGGMSANNLPNNLPSVERLIQRVNAAEKSQQKDIRMSIQEARELTSELAIMTSKLGKTVQEIHSMLLELKDSTNNIDVKFDGGTF*
Ga0157142_100025317F001957GAGGMNSVDMMQNLIHRAKNLQEFVVTTSVPEDFRFNGLIPFDMKIDEGQIEAKVYGLDFNEAVDKFDKWLETCK*
Ga0157142_100025326F026214AGGAMARNYKDYSYFDNRPDVVKVFDDLEAYHDWCRFELREFNPAEMYHKDAPNYGAYLASKRPRRPYMGNKPRFEKREYHQRSY*
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