Basic Information | |
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Taxon OID | 3300012347 Open in IMG/M |
Scaffold ID | Ga0157142_1000253 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Fish Creek, Ontario, Canada - S48 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21230 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (68.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Granton, Ontario | |||||||
Coordinates | Lat. (o) | 43.2206 | Long. (o) | -81.2368 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F001957 | Metagenome / Metatranscriptome | 611 | Y |
F003268 | Metagenome / Metatranscriptome | 496 | Y |
F026214 | Metagenome / Metatranscriptome | 198 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157142_100025315 | F003268 | AGCAGG | MSANNLPNNLPSVERLIQRVNAAEKSQQKDIRMSIQEARELTSELAIMTSKLGKTVQEIHSMLLELKDSTNNIDVKFDGGTF* |
Ga0157142_100025317 | F001957 | GAGG | MNSVDMMQNLIHRAKNLQEFVVTTSVPEDFRFNGLIPFDMKIDEGQIEAKVYGLDFNEAVDKFDKWLETCK* |
Ga0157142_100025326 | F026214 | AGGA | MARNYKDYSYFDNRPDVVKVFDDLEAYHDWCRFELREFNPAEMYHKDAPNYGAYLASKRPRRPYMGNKPRFEKREYHQRSY* |
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