NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0157140_10000032

Scaffold Ga0157140_10000032


Overview

Basic Information
Taxon OID3300012348 Open in IMG/M
Scaffold IDGa0157140_10000032 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31688
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (18.52%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Associated Families13

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameColdwater, Ontario
CoordinatesLat. (o)44.58751Long. (o)-79.6655Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F001338Metagenome / Metatranscriptome719Y
F001923Metagenome / Metatranscriptome617Y
F002038Metagenome / Metatranscriptome600Y
F003583Metagenome / Metatranscriptome478Y
F014261Metagenome264Y
F015597Metagenome253Y
F042341Metagenome / Metatranscriptome158N
F053888Metagenome140Y
F058813Metagenome134N
F065732Metagenome / Metatranscriptome127Y
F088512Metagenome109Y
F098917Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0157140_1000003211F088512GGAMPGTTSPRHIVEAVIDAFLTAESGLAGVAVYTGDSAEINVLPKCVVLCDSARTPGELPEGAGNYFCSVRVTLFSNADDTTLSEHRARCAAIAGAMSDVAGIKAAFVTDGTALCYDVIPESEDEGRDERSWATVLSYTVPIVVNPTP*
Ga0157140_1000003223F042341N/AMSKPPRKSDPPAVKYAEPHFTFRILGKVKPTHNPNCKTPFGYCWKGYGDIHIDPRQPEHEMIDTVVHELIHDTYPFLDEDAVESGATRIAEALWRMGYRRTVIKP*
Ga0157140_1000003224F001923N/AMSASPIDPESIPKELKDGVVASVLGGLAMTARLLLSTEPVSFGWVVRRVLAAAITAALVGYGIQEHISSPGLRMAVVGAAGYAAPECLDYLMRYIKARGEKEVAAVTAKVKTNGKGKTSKAAGKRKR*
Ga0157140_1000003225F003583AGGMAKAKPAKQQASGSDNLLLAVALITGFAGVSAFSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALKSVRDLGWALAVGCLGVGVAVFLRSRRQTD*
Ga0157140_1000003227F014261N/AMKALVTLTAIVIFGWLAVVTFCGPELYRAINGPEPVKAKVTRHHRAK*
Ga0157140_1000003230F053888N/AMNQEPTDIVTIGDRPIRLTRPVLPHAARRLASVLPQLNALNTAGKSQADAAAALGVSVGSIRTWIGLAGISWSNLNRRGPYAKRNK*
Ga0157140_1000003233F000957AGGAGGMSGSFQHLDGMTALLSELYEINERIMCGDIVSAKAAINSTRMTKLLRHYHEALSEDGAVAISLDVFVAAGGWVGITYSYQLSDGFVISGSQTPRRV*
Ga0157140_1000003240F015597N/AMSDPFDPIEAAMRNLNNANLLAAKDARIRQLEERLEGMREAGDQLWYCVRHAQRVHPEELIDAVQEWQEARNHG*
Ga0157140_1000003242F002038N/AMSDTPKGIEKIATTIRGQYALLLLLDGYPYVEMTARKHADFLTDLNAWKRKTYPSLARSVVRFFTLAPSGEVKELTFTK*
Ga0157140_1000003243F098917N/AMTNREYLRNLLTQLAGELATLRPTSFEGIAGDANALAESIIAANNELDALDAEKIEEAYHVKPIYDRIKAVVAHERVLRNQLDRIALSADNAIDLCNLISAHVEEHTPGEDDAAL*
Ga0157140_1000003245F001338N/AMEPNNDKAPLTTISQSGTYKLKLIRPKGTDKVKVWEDGTSSCRLFFLDDKGFCLSKNFSSKYGKALAMLVGKFSGKFTNEIRLDATPAEFLEYIAPACGQTLLVGVEVEPNGEWQGKPQFKYKLSYPRGSQKPTVAEPTPENPPF*
Ga0157140_1000003247F058813N/AMEPMSAPTLVLISGFARAGKDTLAEGILEWSRRPSRKTSFAAHLKDAANDFLWSLNMEGDFHNDAFKTKHRDVLVTLGKFARSLNPDIFAENLAHYVPIQMTPDEVAPETVVCSDWRYINELRVCQSILWDLGWKVRTVYVSTAGVGPANDEELDSICEIKQFHSFDQEFVFAPNSRQCILAEGRHLAKTWNL*
Ga0157140_1000003248F065732N/AMEPLNLGEAMSADERIAWAKRAGLSEERIAFLLACPKFTRTGRNDKPAYIKAENPNHHLQKLGSCWWLRIRRRKTDIVHNLGKDLETARRHRDEMLAAYDAGLPIPHLESK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.