NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157140_10000054

Scaffold Ga0157140_10000054


Overview

Basic Information
Taxon OID3300012348 Open in IMG/M
Scaffold IDGa0157140_10000054 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19467
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (75.51%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameColdwater, Ontario
CoordinatesLat. (o)44.58751Long. (o)-79.6655Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001713Metagenome648Y
F002487Metagenome / Metatranscriptome554Y
F053242Metagenome141N
F063703Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0157140_1000005417F053242N/AMICERRGHFLIGEWKKPNEKMAKGQELLLQAFAQVPKFTVLVIIGNTDKEQTEVGSVFQIVLGRCVKIGEGLDFLKDFYVMWYEFANQKG*
Ga0157140_1000005421F002487N/AMTREDAIKDLSHGLYCVYCTEPKTYGSCCSENHFVEFEDLYDEDKEAMIKEYLKEE*
Ga0157140_1000005422F063703GAGGMNTEQLRRKARQLYNNSLVPQQVNQYNQRKWVRAVLKLGDKWLVAKQIGRIQ*
Ga0157140_1000005431F001713AGGAMKYEFDTTVGEGSVVVTVVMEYDIDEEGIYGENIEDIIYEKVSVLGLFSAEQYKELEIEGCMRLSKHILDEADHSASVDYDMRGV*
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