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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012348 Open in IMG/M |
| Scaffold ID | Ga0157140_10000307 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6110 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Coldwater, Ontario | |||||||
| Coordinates | Lat. (o) | 44.58751 | Long. (o) | -79.6655 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002018 | Metagenome / Metatranscriptome | 603 | Y |
| F009684 | Metagenome | 314 | Y |
| F054038 | Metagenome / Metatranscriptome | 140 | Y |
| F097333 | Metagenome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157140_100003072 | F002018 | GGA | MTSYQSLINEITTFYDNHIQVKKVGSDFKEQMFNFATKDERYPIIYIVPISALPTENTNDFTLEIYCFDIIQKDRENINVILSDCQQILYDLYTYFINSNNYAFDVVDIPSFTPLNNDLLDYCAGWVMTATYSVNNWTDCAVPLKQIGN* |
| Ga0157140_100003073 | F097333 | N/A | MAIYNQSWLHTIAYDLQAPDVDGNLWQSICLHYGITQTKNGTWLEALCDFFNVNKEEGEAWIQALAEDFGATAPVNGSWIQALALQIQGQADLIDIFVNRINNTGGTFEAEVCLEETLNSLEI* |
| Ga0157140_100003075 | F009684 | N/A | MNIFKLTYENKEQATADLKSKGILVEVEFNGEKHEAYGEGVQAVVEIGLIMITPPVMDGMVIVTPPVYADGYHYDVMSENTYDFGTNLVEPKNPKHAFAGHATTEEFPYEPNF* |
| Ga0157140_100003076 | F054038 | N/A | MAYKNNGVFNVKYKTRNKIAQTLRKIILEETLIDTGSLYDSVRINAQIPALGQLEIQIIAMYYFGFLNNGTINMASFDLCAKLTQRLQNDGTTAEIFDQYTQWMAERYPILQVARILGEKTSLVYIFEPIGGEFSAGLTFRGF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |