NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157140_10007412

Scaffold Ga0157140_10007412


Overview

Basic Information
Taxon OID3300012348 Open in IMG/M
Scaffold IDGa0157140_10007412 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1154
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameColdwater, Ontario
CoordinatesLat. (o)44.58751Long. (o)-79.6655Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F074873Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0157140_100074121F074873N/APWDTPEKFVIELSKLYPNTVFEMVSGSIENDNHYEFTCKNGNMEITSCYGSFREAVEDGKWGGMDEWSDVYEESEEV*
Ga0157140_100074123F002406N/AMENLKWISAMSERLRDELSKEYDDETKDLIIRAFRNGLFQNPGIVEELKSSSLIESDYFEDEDED*
Ga0157140_100074125F002398AGGMLPIISVLILSSLDPIKNFVSLKTYISENAKIHCQVYFIDENIADYPRVNIIEKSRNDFFIYLDSIGVEHKQLG
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