NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137372_10011983

Scaffold Ga0137372_10011983


Overview

Basic Information
Taxon OID3300012350 Open in IMG/M
Scaffold IDGa0137372_10011983 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8293
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000208Metagenome / Metatranscriptome1593Y
F002560Metagenome / Metatranscriptome548Y
F003228Metagenome / Metatranscriptome499Y
F007596Metagenome348Y

Sequences

Protein IDFamilyRBSSequence
Ga0137372_1001198310F002560AGGAGGMVEHNPPSSADSARAPVIPLPVALYVSDGLIFELYDGGQPCRSFSIRWERLVPTRKDQPETVSPNPQAASRTRRD*
Ga0137372_1001198311F000208GAGMAMRIRVTTRADLYEKRKQQHLERGYRIEDERPIPVNGFCSFVAVRELPASDTLADLVAEALNGNHAAHGDW*
Ga0137372_1001198312F007596GAGGMSLKIRFRFDGRCTRHPRYDPKRDGRPSDGKCEGCESLYVIHLYTKIAKRRAENENGIVVRTSSGREEPRAIDEFRQLSNTENK*
Ga0137372_100119833F003228AGGAMGQNQHDNSEPLDAQQAAAKAAILAECEKLTAVGIRFVAVHFDGYGDEGTTEEMKCYDTEWYAADEHEPVKYDASHLQEHFESLVPVGYENDCGGFGDVILNVNARKLTVERNDRFEDYTTTTYEV*
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