NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137372_10617379

Scaffold Ga0137372_10617379


Overview

Basic Information
Taxon OID3300012350 Open in IMG/M
Scaffold IDGa0137372_10617379 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)793
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022944Metagenome / Metatranscriptome212Y
F042525Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0137372_106173791F022944N/AVNRHSLIDIGLAISLLVGFSTTGRAEENTVVAADNLKYSRDFYSKVHFVAIANLSLGSAGTAEFKYDRYPNGGPERIQAGDAEFARKDGKTWLKSNDWGDTGKPVDAQTSKRLNNWVSLIQARLNGEPASNDPSEGATVMKFIGKEDQGEREEFVFEESKETPKSKSYPHVSFGRYKSDKEGPVLLSEFSGPM
Ga0137372_106173792F042525N/AYLRRAKASTEPESRIADLQRAIADFKTSIALGAASEDELNRGLEKVATKANLEEATKLLARETRR*
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