NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137372_10716732

Scaffold Ga0137372_10716732


Overview

Basic Information
Taxon OID3300012350 Open in IMG/M
Scaffold IDGa0137372_10716732 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)723
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006058Metagenome / Metatranscriptome382N

Sequences

Protein IDFamilyRBSSequence
Ga0137372_107167321F006058GGAMENAFNVPLKCTPEERKHFVDRAMQEAQNSNFPSALEIVTNGLDAHPASEGLLFLKAYFGYKVADNMSNELSSYPRIIEPIGNGALMIDGAMTSQMLNRFQDIVNTLSDAEEAINELLQVNPKSKEVAEFKGYIDQKRQHLDQESESIRTAFNKSPQLAGNFCMGCQRTISYDTQK
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