Basic Information | |
---|---|
Taxon OID | 3300012352 Open in IMG/M |
Scaffold ID | Ga0157138_1000032 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 38509 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (12.96%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Fraserville, Ontario | |||||||
Coordinates | Lat. (o) | 44.16961 | Long. (o) | -78.4089 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004112 | Metagenome / Metatranscriptome | 452 | Y |
F073468 | Metagenome / Metatranscriptome | 120 | N |
F105046 | Metagenome / Metatranscriptome | 100 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0157138_100003234 | F105046 | N/A | MDQGILVTIVIQSIVFIGALSKMFTDMKIKLRELDLRVRTLEKKEDEIGEKLTKIFDALQDIKLELKDKADRE* |
Ga0157138_100003235 | F073468 | N/A | MKQLVDNVKTSLFGAVAGLPVIWEGAEAGDWKMILAGIGMFLVGLFASDAKEQK* |
Ga0157138_100003239 | F004112 | N/A | MSLLPRDFYDMSPRNFSLMIKGHEAKKVDEYKQNRMLMFTLIRLMGDPKTAPKTPEEFWSLPGDEEKEVNTEEEYREIFKRLRENG* |
⦗Top⦘ |