Scaffold Ga0157138_1000052

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0157138_1000052

Scaffold Ga0157138_1000052

Overview

Basic Information
Taxon OID	3300012352 Open in IMG/M
Scaffold ID	Ga0157138_1000052 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	32028
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (28.26%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Fraserville, Ontario
Coordinates	Lat. (^o)	44.16961	Long. (^o)	-78.4089	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014131	Metagenome	265	Y
F067522	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_100005240	F014131	AGG	MCWFKLGNWVEAWINIFTLGFGKDIAGIVANKLGYASCGCEERRIWLNELCGCKEGIKF*
Ga0157138_100005244	F067522	N/A	MNEVTGSIQLECERRLSNLYIESHTWLVQSAQRVTKNKEHAEDLVAELYEYLHKKCNVKLFWGDNSYNLKYCAKFLHHRFLNKTTKLNRTTYVEEVWDTEIDLEYDTERDIALEKAYNDVQDELNHLQQTKLWASGRIFEMYWNSDKTLDEVAKDIGISKSTTFLAVKKIRKHLKSVIDNPFNE*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.