Scaffold Ga0137366_10012933

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137366_10012933

Scaffold Ga0137366_10012933

Overview

Basic Information
Taxon OID	3300012354 Open in IMG/M
Scaffold ID	Ga0137366_10012933 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6556
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.5673	Long. (^o)	-123.4758	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010418	Metagenome / Metatranscriptome	304	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137366_100129339	F010418	GAG	MKKYEDRSDGGICISDNQAQIYLAPNEAYALWQWLSARKDAFQAYSSEKQLELEIHLHEEDLSHLDELIAAFPDLHEREPIVKVLDTRWETVSERALQLLKDYQIEYHIHPLLEDDDIYAQG*

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