NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137369_10004820

Scaffold Ga0137369_10004820


Overview

Basic Information
Taxon OID3300012355 Open in IMG/M
Scaffold IDGa0137369_10004820 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13768
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001175Metagenome / Metatranscriptome756Y
F001699Metagenome / Metatranscriptome649Y
F011376Metagenome / Metatranscriptome291Y
F018903Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0137369_1000482010F001175N/AVKRGGLAALALAVAACGPSDPCSGYQFQRLQRFSRPYAGHWVVARGDTLTLPDSPPMSDRFRLGDVVLDTATVRAGNDCLFRGQLVFRAPRAETLAVRWFGQPEQAIVHGWPADLGPFAGVSLAWWGRDSLRGSVLFDARLGVQVRPGVTAQFVAGRLSSQP*
Ga0137369_1000482014F011376GGAVAHRAGAVSAPWQAQVALGWAVVGPPLVIYGATRVGRRQIPLHRRLMLSWVAVELLVFASFSLLMEPGPRRPALMALPIFKIHLAFAVSTLAGIAWQLSSRALPRLRPLHRHTGPYVVLVWCLALLTGIYNFVFLYVMGSP*
Ga0137369_1000482015F001699N/AMKVAFRHLFIALLPLVFGLAASWGFAFSQNTCGRLVGTVFAPKCHWIQLQYQLGFQSAGTALGCLVAAWLGALLELRSRRAVQRADSQPGEP*
Ga0137369_100048209F018903GGAGMKPITWIALLCFATACGSDGGGSQQAVNRDTLTERQKDSILAKSKIPGARAVGNAMTAADSTSARIRQANAVATDTMPR*
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