Scaffold Ga0137368_10191734

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137368_10191734

Scaffold Ga0137368_10191734

Overview

Basic Information
Taxon OID	3300012358 Open in IMG/M
Scaffold ID	Ga0137368_10191734 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1463
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.5673	Long. (^o)	-123.4758	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053955	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137368_101917342	F053955	GGGGG	METRRRLVQTLVTTIELALTSTLAAVYIVSAFFALTPFIGGPGFITLEIVMLPIIAFLLRPVLATAATFVGSLGSAFIQTSFFHVFGLPGLLIPLLAVALGSIAFHYEWGPIAPWAYVLAGAVYYIIFSKGGTLFWLAPYTLVIISLPAALRAKDPYRTGLLALYTAMSEQVSLNVFSISLLNLKGDFWIGVTPLMFLERTVATLGAFAVIVALKSQLGRRLELGHVLREVK*

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