NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137375_10819454

Scaffold Ga0137375_10819454


Overview

Basic Information
Taxon OID3300012360 Open in IMG/M
Scaffold IDGa0137375_10819454 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)747
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020428Metagenome / Metatranscriptome224Y
F029536Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0137375_108194541F020428GGAGGMIARRCDFLLWVALTAAATTALGQTVATDTPPAGKIAQTAIPDFSGIWAHPFLTGFEPPASGPGPVLNTSRSRNGVANFQQLVGDYTNPILQPHAAAIVKKSGEMSRAGSVYPTPSNQCWPGGVPYVFWDFLMQMFQTPDQTTFVYRHGNEVRRVRMNQPHPAKV
Ga0137375_108194542F029536N/AFTVDDPDAFYEPWSGMRRYRRVQQTGYEKICAEGNRHLFDWPMPMAEKPDF*
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