NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137360_10122086

Scaffold Ga0137360_10122086


Overview

Basic Information
Taxon OID3300012361 Open in IMG/M
Scaffold IDGa0137360_10122086 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2027
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005884Metagenome / Metatranscriptome387Y
F012470Metagenome / Metatranscriptome280Y
F062904Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0137360_101220862F005884GGAMHEPTQESIVSVLCHRERASIADVTQVLGPQFASIIPQEIQRMKSSGLVIYDEPLGPYSVISLSG*
Ga0137360_101220864F012470AGGMVMSTYQELSQTFAASVQLQAQYVSECCAFANFFFSQMAAYLAWPKDQMAFAPDERSQIEEPICDTNSVRLQGDGNIHFFALFTIKRFDNVHHRYQLIFPFTVKKLEESFLLTITGLVEEVLLSTKDTQEMNNVYEDLFAAMKSYFDTPYLDFTSEDFLRRTLP*
Ga0137360_101220865F062904AGGAGGMNPEQEWQAQAKRVEDSMRQFDDDLRYLNWRIAKLETMIRRALDQVNTVDVSPD*
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