Basic Information | |
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Taxon OID | 3300012362 Open in IMG/M |
Scaffold ID | Ga0137361_10006005 Open in IMG/M |
Source Dataset Name | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8255 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013998 | Metagenome / Metatranscriptome | 266 | N |
F014491 | Metagenome / Metatranscriptome | 262 | N |
F016384 | Metagenome / Metatranscriptome | 247 | N |
Protein ID | Family | RBS | Sequence |
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Ga0137361_100060051 | F016384 | N/A | SGEGSQAWSEVLGLREDFKSHLSWVMGLGHLSDTFSRHAVPNYLVRVLHPLSQSLRVNLLLGMLPDCFLEVRALTEQLARAFQADLKFSKESSFTSKLSRLDVREPSLYKLTGETDTSVLPLLSELGHGWVRMDQPLTGIGASLPVSAASITYTTRDIPELLRLTSAVKRFRELLSKTMNQWSSKLDRKDSPPASKGS* |
Ga0137361_100060056 | F014491 | N/A | MTLLILASLAMFGTIAYTIALQEITNSAISYITGLLISVTGILLGLSGLTPQSKSLERMKLQVTLTITTLLWLVAVVMVAQTATPFTFEASTAILRYLFLVGIALFTILVVMYSTTTIEATRQRLIAELAAKSNQPGRATG* |
Ga0137361_100060057 | F013998 | AGG | MRLKMPLKMHRLLSLVAFVLALIGGVLVVLSALGGLGHLSIGSLAVNSLVFLFGLGAILGGWLIYTGIRKLGGIMTLLAGIILFVLTGSAGIAVLLVLVAGVLGLVAAEMKPWWAFWR* |
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